Here are examples of how some of the basic Mathematica constructs used in the notes in this book work: • Iteration Nest[f, x, 3] ⟶ f[f[f[x]]] NestList[f, x, 3] ⟶ {x, f[x], f[f[x]], f[f[f[x]]]} Fold[f, x, {1, 2}] ⟶ f[f[x, 1], 2] FoldList[f, x, {1, 2}] ⟶ {x, f[x, 1], f[f[x, 1], 2]} • Functional operations Function[x, x + k][a] ⟶ a + k (# + k&)[a] ⟶ a + k (r[#1] + s[#2]&)[a, b] ⟶ r[a] + s[b] Map[f, {a, b, c}] ⟶ {f[a], f[b], f[c]} Apply[f, {a, b, c}] ⟶ f[a, b, c] Select[{1, 2, 3, 4, 5}, EvenQ] ⟶ {2, 4} MapIndexed[f, {a, b, c}] ⟶ {f[a, {1}], f[b, {2}], f[c, {3}]} • List manipulation {a, b, c, d} 〚 3 〛 ⟶ c {a, b, c, d} 〚 {2, 4, 3, 2} 〛 ⟶ {b, d, c, b} Take[{a, b, c, d, e}, 2] ⟶ {a, b} Drop[{a, b, c, d, e}, -2] ⟶ {a, b, c} Rest[{a, b, c, d}] ⟶ {b, c, d} ReplacePart[{a, b, c, d}, x, 3] ⟶ {a, b, x, d} Length[{a, b, c}] ⟶ 3 Range[5] ⟶ {1, 2, 3, 4, 5} Table[f[i], {i, 4}] ⟶ {f[1], f[2], f[3], f[4]} Table[f[i, j], {i, 2}, {j, 3}] ⟶ {{f[1, 1], f[1, 2], f[1, 3]}, {f[2, 1], f[2, 2], f[2, 3]}} Array[f, {2, 2}] ⟶ {{f[1, 1], f[1, 2]}, {f[2, 1], f[2, 2]}} Flatten[{{a, b}, {c}, {d, e}}] ⟶ {a, b, c, d, e} Flatten[{{a, {b, c}}, {{d}, e}}, 1] ⟶ {a, {b, c}, {d}, e} Partition[{a, b, c, d}, 2, 1] ⟶ {{a, b}, {b, c}, {c, d}} Split[{a, a, a, b, b, a, a}] ⟶ {{a, a, a}, {b, b}, {a, a}} ListConvolve[{a, b}, {1, 2, 3, 4, 5}] ⟶ {2a + b, 3a + 2b, 4a + 3b, 5a + 4b} Position[{a, b, c, a, a}, a] ⟶ {{1}, {4}, {5}} RotateLeft[{a, b, c, d, e}, 2] ⟶ {c, d, e, a, b} Join[{a, b, c}, {d, b}] ⟶ {a, b, c, d, b} Union[{a, a, c, b, b}] ⟶ {a, b, c} • Transformation rules {a, b, c, d} /. b  p ⟶ {a, p, c, d} {f[a], f[b], f[c]} /. f[a]  p ⟶ {p, f[b], f[c]} {f[a], f[b], f[c]} /. f[x_]  p[x] ⟶ {p[a], p[b], p[c]} {f[1], f[b], f[2]} /. f[x_Integer]  p[x] ⟶ {p[1], f[b], p[2]} {f[1, 2], f[3], f[4, 5]} /. f[x_, y_]  x + y ⟶ {3, f[3], 9} {f[1], g[2], f[2], g[3]} /. f[1] | g[_]  p ⟶ {p, p, f[2], p} • Numerical functions Quotient[207, 10] ⟶ 20 Mod[207, 10] ⟶ 7 Floor[1.45] ⟶ 1 Ceiling[1.45] ⟶ 2 IntegerDigits[13, 2] ⟶ {1, 1, 0, 1} IntegerDigits[13, 2, 6] ⟶ {0, 0, 1, 1, 0, 1} DigitCount[13, 2, 1] ⟶ 3 FromDigits[{1, 1, 0, 1}, 2] ⟶ 13 The Mathematica programs in these notes are formatted in Mathematica StandardForm .

CTToR110[rules_ /; Select[rules, Mod[Length[#], 6] ≠ 0 &]  {}, init_] := Module[{g1, g2, g3, nr = 0, x1, y1, sp}, g1 = Flatten[ Map[If[#1 === {}, {{{2}}}, {{{1, 3, 5 - First[#1]}}, Table[ {4, 5 - # 〚 n 〛 }, {n, 2, Length[#]}]}] &, rules] /. a_Integer  Map[({d[# 〚 1 〛 , # 〚 2 〛 ], s[# 〚 3 〛 ]}) &, Partition[c[a], 3]], 4]; g2 = g1 = MapThread[If[#1 === #2 === {d[22, 11], s3}, {d[ 20, 8], s3}, #1] &, {g1, RotateRight[g1, 6]}]; While[Mod[ Apply[Plus, Map[# 〚 1, 2 〛 &, g2, 30] ≠ 0, nr++; g2 = Join[ g2, g1]]; y1 = g2 〚 1, 1, 2 〛 - 11; If[y1 < 0, y1 += 30]; Cases[ Last[g2] 〚 2 〛 , s[d[x_, y1], _, _, a_]  (x1 = x + Length[a])]; g3 = Fold[sadd, {d[x1, y1], {}}, g2]; sp = Ceiling[5 Length[ g3 〚 2 〛 ]/(28 nr) + 2]; {Join[Fold[sadd, {d[17, 1], {}}, Flatten[Table[{{d[sp 28 + 6, 1], s[5]}, {d[398, 1], s[5]}, { d[342, 1], s[5]}, {d[370, 1], s[5]}}, {3}], 1]] 〚 2 〛 , bg[ 4, 11]], Flatten[Join[Table[bgi, {sp 2 + 1 + 24 Length[init]}], init /. {0  init0, 1  init1}, bg[1, 9], bg[6, 60 - g2 〚 1, 1, 1 〛 + g3 〚 1, 1 〛 + If[g2 〚 1, 1, 2 〛 < g3 〚 1, 2 〛 , 8, 0]]]], g3 〚 2 〛 }] s[1] = struct[{3, 0, 1, 10, 4, 8}, 2]; s[2] = struct[{3, 0, 1, 1, 619, 15}, 2]; s[3] = struct[{3, 0, 1, 10, 4956, 18}, 2]; s[4] = struct[{0, 0, 9, 10, 4, 8}]; s[5] = struct[{5, 0, 9, 14, 1, 1}]; {c[1], c[2]} = Map[Join[{22, 11, 3, 39, 3, 1}, #] &, {{63, 12, 2, 48, 5, 4, 29, 26, 4, 43, 26, 4, 23, 3, 4, 47, 4, 4}, {87, 6, 2, 32, 2, 4, 13, 23, 4, 27, 16, 4}}]; {c[3], c[4], c[5]} = Map[Join[#, {4, 17, 22, 4, 39, 27, 4, 47, 4, 4}] &, {{17, 22, 4, 23, 24, 4, 31, 29}, {17, 22, 4, 47, 18, 4, 15, 19}, {41, 16, 4, 47, 18, 4, 15, 19}}] {init0, init1} = Map[IntegerDigits[216 (# + 432 10 49 ), 2] &, {246005560154658471735510051750569922628065067661, 1043746165489466852897089830441756550889834709645}] bgi = IntegerDigits[9976, 2] bg[s_, n_] := Array[bgi 〚 1 + Mod[# - 1, 14] 〛 &, n, s] ev[s[d[x_, y_], pl_, pr_, b_]] := Module[{r, pl1, pr1}, r = Sign[BitAnd[2^ListConvolve[{1, 2, 4}, Join[bg[pl - 2, 2], b, bg[pr, 2]]], 110]]; pl1 = (Position[r - bg[pl + 3, Length[r]], 1 | -1] /. {}  {{Length[r]}}) 〚 1, 1 〛 ; pr1 = Max[pl1, (Position[r - bg[pr + 5 - Length[r], Length[r]], 1 | -1] /. {}  {{1}}) 〚 -1, 1 〛 ]; s[d[x + pl1 - 2, y + 1], pl1 + Mod[pl + 2, 14], 1 + Mod[pr + 4, 14] + pr1 - Length[r], Take[r, {pl1, pr1}]]] struct[{x_, y_, pl_, pr_, b_, bl_}, p_Integer : 1] := Module[ {gr = s[d[x, y], pl, pr, IntegerDigits[b, 2, bl]], p2 = p + 1}, Drop[NestWhile[Append[#, ev[Last[#]]] &, {gr}, If[Rest[Last[#]] === Rest[gr], p2--]; p2 > 0 &], -1]] sadd[{d[x_, y_], b_}, {d[dx_, dy_], st_}] := Module[{x1 = dx - x, y1 = dy - y, b2, x2, y2}, While[y1 > 0, {x1, y1} += If[Length[st]  30, {8, -30}, {-2, -3}]]; b2 = First[Cases[st, s[d[x3_, -y1], pl_, _, sb_]  Join[bg[pl - x1 - x3, x1 + x3], x2 = x3 + Length[sb]; y2 = -y1; sb]]]; {d[x2, y2], Join[b, b2]}] CTToR110[{{}}, {1}] yields blocks of lengths {7204, 1873, 7088} . … In the first two blocks, much of what one sees is just padding to prevent clock pulses on the left from hitting data in the middle too early on any given step.